Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015839471.1_cds_XP_016507306.1_20445
CDS Infomation

[gene=LOC107824993] [db_xref=GeneID:107824993] [protein=rab3 GTPase-activating protein catalytic subunit-like isoform X4] [protein_id=XP_016507306.1] [location=complement(join(1343..1486,2423..2494,2621..2801,4504..4577,4682..4768,5357..5490,5618..5749,8972..9061,9187..9296,11691..11817,12248..12476,13258..13429,14689..14786,14910..15010,15110..15155))] [gbkey=CDS]
Sequence

ATGAAAAGCTATTGCATGGAGTACTATTTTGGAACACTTAATGATGGAAAAGGAAAGGAC
TGGAGTTGTGTACTGCATGATCTGCAGCTGTTTTTTGGGGTGAATGAGTTCCTGGTATCT
CTATCACTTATAAAAAAAAAGTTCCTGGTGATTGCTCCTCAAAGTGCCAGTGGTGTGGTT
CTTGATGGACCAGAGGCCAGCAAACTTCTAAGTGCAGTTGCTATTGCCTTGTCGAACTGT
TCCAGTTTGTGGCCAGCATTCGTTCCGGTGCATGATCCTTCTCGTAAAGCTTACATTGGT
ATTCAGAATATGGGAACCCTTTTCACCCGGCGATTTGAGGCTGACCGTATAGGTAGCCAA
GTGCCGGTGAAGCTTATGCATTTGGAGGGATTGTATGAGCTATTTGTTTCTAAATTTGCC
TTCTCCAATGAGGACTTATCTACGCATCTTTTCGAAGTGAGTTTCAAGATGAAGCTAACC
TATTGTACACTTCCCTACGATGAGGATGATGATGATGATGTACAAGAACCTGAGGCAGGG
AGTACAGAATCTGGTGGGAGTCCCAAAAGCAATCATCACAATAAGTCACAGTGGGATGAT
GATTGTCCTTGGAGTGAATGGTACTCGTCAGAGGACCCAGTAAGAGGGTTTGAGTTGATT
GCGGTGTGGTCTGAGAAAGCATTTGAAAGTTCACTTGATATGGCTGAGTTGGAAAATGCT
TCACCTCTTGAAGCTGATGACTGGTTGATATTTCCATGTTTGTCTGAGACTCTCACTGAG
GATTCTGATGGAAAGAGGATTGGATTTGCATCACAGTTGCGGCTTCTTGTTGATGCTCTG
GAAATGTCAATGGAAGCAAAGTTTATAGAAGATTTTGTTTCAGAGCATTCAGGACCTGAG
ACTTTGAAGTCTAGTGCAGTCATACCTCCTCCAACTGTCCTTGATCGTGTGCTCAAAGAC
CTTTTTCATGAGGTTGAAGGCCTGCAACTTGGTTTTTCTGATGGAGATCATAAAAATTCC
CGCACCATTAAAGGTGCCCCTCTTGAGTCACTGTTTGGGCAGTTCTGTCTGCATGCTCTG
TGGTTTGGTGATTGCAATATACGTGCTATTGCTGTATTCTGGATAGAGTTCGTACGGGAA
GTTCGCTGGTGTTGGGAAGAGTCACAGCCAGTACCTAGAATGCCATCTAATTGTGTAATT
GATCTATCTACCTGCCTGATTAACCAGAAACTACACATGCTTTCAATTTGCATTAATAAA
AAGCGTCAGCAGGAACAAGAGAGTCCAAAGTGTGGTGAACAAAAAAAATTTCCTTCTCAT
GTTAAGGAAGAGACTCAGGTCAAACGTTGTTTATCTCCTCGTGATGGAAAAACTCAGACT
TCTTCTGGAGAACGTGAAAGTCTATCAAGACCAGATGTTGTAAAAGATTCTGTGGGTCAT
ATTTCTAATTCTGGACATTCTGATACTGTGAAATTGGGTGATGCTAAGCATTCAGCATGT
ATTAGGAGGGGATCAGCTGGTGTTGTGGGTTCTATGATGCTTTTGAAATCTCAACAGAAC
ATGCATGCTCCATTTACACAGGAGCCGCCGGTTATGACCGAAGATATGCATGAAGAACGT
CTACAAGCTGTTGAAGCATTAGGTGATTCTTTTAGCTTTTCGGCTCAACTGGAGAAAGAC
ATTTTATCATCAGGTACTGACTTCTGTGCTTATTTTCTTAAAGGCCTTCCTTGCTGTTCT
GTCTTGCATCATGTCCATGTTCATGTAGTGGTATTTTCTCAGTGGTCGTTAAAGTGA

Peptide Sequence

PEP ID

XP_016507306.1
PEP Infomation

PREDICTED: rab3 GTPase-activating protein catalytic subunit-like isoform X4 [Nicotiana tabacum]
Sequence

MKSYCMEYYFGTLNDGKGKDWSCVLHDLQLFFGVNEFLVSLSLIKKKFLVIAPQSASGVV
LDGPEASKLLSAVAIALSNCSSLWPAFVPVHDPSRKAYIGIQNMGTLFTRRFEADRIGSQ
VPVKLMHLEGLYELFVSKFAFSNEDLSTHLFEVSFKMKLTYCTLPYDEDDDDDVQEPEAG
STESGGSPKSNHHNKSQWDDDCPWSEWYSSEDPVRGFELIAVWSEKAFESSLDMAELENA
SPLEADDWLIFPCLSETLTEDSDGKRIGFASQLRLLVDALEMSMEAKFIEDFVSEHSGPE
TLKSSAVIPPPTVLDRVLKDLFHEVEGLQLGFSDGDHKNSRTIKGAPLESLFGQFCLHAL
WFGDCNIRAIAVFWIEFVREVRWCWEESQPVPRMPSNCVIDLSTCLINQKLHMLSICINK
KRQQEQESPKCGEQKKFPSHVKEETQVKRCLSPRDGKTQTSSGERESLSRPDVVKDSVGH
ISNSGHSDTVKLGDAKHSACIRRGSAGVVGSMMLLKSQQNMHAPFTQEPPVMTEDMHEER
LQAVEALGDSFSFSAQLEKDILSSGTDFCAYFLKGLPCCSVLHHVHVHVVVFSQWSLK

Transcript Sequence

Gene sequence data has not been registered.